MolNFT v1 · #127192 · protein
Structure of the unliganded Fab from HIV-1 neutralizing antibody CAP248-2B that binds to the GP120 C-terminus - GP41 interface, at two ångström resolution.
5MP6: “Structure of the unliganded Fab from HIV-1 neutralizing antibody CAP248-2B that binds to the GP120 C-terminus…”. X-ray diffraction, 1 ligand (SO4). MolNFT v1 #127192 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5MP6
- Type
- protein
- Length
- 874 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- SO4
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| P | — | protein | 211 | — | — |
| Q | — | protein | 208 | — | — |
| H | — | protein | 230 | — | — |
| L | — | protein | 225 | — | — |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 14 copies · chains P, Q, H, L
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5MP6 · Structure of the Unliganded Fab from HIV-1 Neutralizing Antibody CAP248-2B that Binds to… · the same entry in another collection · chain P against P, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5MP6 · PDBe 5MP6
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