MolNFT v1 · #12713 · RNA
A mutant RNA pseudoknot that promotes ribosomal frameshifting in mouse mammary tumor virus, NMR, minimized average structure
1KPD · RNA pseudoknot APKA27G: “A mutant RNA pseudoknot that promotes ribosomal frameshifting in mouse mammary tumor virus, NMR, minimized…”. Solution nmr, 2 pockets (best druggability 0.41). MolNFT v1 #12713 on GenesisL1: 3D structure…
- PDB
- 1KPD
- Type
- RNA
- Length
- 32 nucleotides
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA pseudoknot APKA27G
- Pockets
- 2 · best druggability 0.41
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA pseudoknot APKA27G | rna | 32 | — | — |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 111 | 0.41 | 0.78 | 16 | empty |
| 2 | 57 | 0.26 | 0.74 | 9 | empty |
Compared structures
- 1KPD · A mutant RNA pseudoknot that promotes ribosomal frameshifting in mouse mammary tumor… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1KPD · PDBe 1KPD
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.