MolNFT v1 · #127021 · protein

Maltodextrin binding protein MALE1 from L. casei BL23 without ligand

5MKB: “Maltodextrin binding protein MALE1 from L. casei BL23 without ligand”. X-ray diffraction, 20 pockets (best druggability 0.79). MolNFT v1 #127021 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5MKB
Type: protein
Length: 2,984 residues
Chains: 8
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: MALE1
UniProt: B0L7B0
Pockets: 20 · best druggability 0.79

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C, D, E, F, G, H	MALE1	protein	373	44% helix, 20% strand	B0L7B0

Pockets

20 pockets found on a 1 Å grid, 11 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	974	0.79	0.81	121	empty
2	825	0.78	0.81	103	empty
3	672	0.69	0.77	71	empty
4	351	0.68	0.81	54	empty
5	603	0.67	0.76	66	empty

Interfaces

12 interfaces between chains.

E–H · 503 Å² buried · 4 hydrogen bonds · protein-protein
A–C · 498 Å² buried · 1 hydrogen bond · protein-protein
B–F · 483 Å² buried · 2 hydrogen bonds · protein-protein
A–D · 370 Å² buried · 3 hydrogen bonds · protein-protein
C–E · 319 Å² buried · 8 hydrogen bonds · protein-protein

Compared structures

5MKB · Maltodextrin binding protein MalE1 from L. casei BL23 without ligand · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B0L7B0
Elsewhere: RCSB PDB 5MKB · PDBe 5MKB · UniProt B0L7B0

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