MolNFT v1 · #127020 · protein
Maltodextrin binding protein MALE1 from L. casei BL23 bound to gamma- cyclodextrin
5MKA: “Maltodextrin binding protein MALE1 from L. casei BL23 bound to gamma- cyclodextrin”. X-ray diffraction, 1 ligand (GLC), 3 pockets (best druggability 0.59). MolNFT v1 #127020 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5MKA
- Type
- protein
- Length
- 372 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- MALE1
- UniProt
- B0L7B0
- Ligands
- GLC
- Pockets
- 3 · best druggability 0.59
Structure
x-ray diffraction · 1 distinct chain · 48% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | MALE1 | protein | 372 | 48% helix, 21% strand | B0L7B0 |
Ligands and binding sites
- GLC · alpha-D-glucopyranose · sugar · 8 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 426 | 0.59 | 0.75 | 49 | GLC |
| 2 | 120 | 0.44 | 0.77 | 26 | empty |
| 3 | 57 | 0.40 | 0.81 | 16 | empty |
Compared structures
- 5MKA · Maltodextrin binding protein MalE1 from L. casei BL23 bound to gamma-cyclodextrin · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B0L7B0
- Elsewhere: RCSB PDB 5MKA · PDBe 5MKA · UniProt B0L7B0
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