MolNFT v1 · #126988 · protein

Metngb under oxygen at 80 bar

5MJD · Neuroglobin: “Metngb under oxygen at 80 bar”. X-ray diffraction, 3 ligands (HEM, SO4, OXY), 1 pocket (best druggability 0.73). MolNFT v1 #126988 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5MJD
Type: protein
Length: 148 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Neuroglobin
UniProt: Q9ER97
Ligands: HEM, SO4, OXY
Pockets: 1 · best druggability 0.73

Structure

x-ray diffraction · 1 distinct chain · 80% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Neuroglobin	protein	148	80% helix, 1% strand	Q9ER97

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · chains A
SO4 · Sulfate ion · ion · chains A
OXY · Oxygen molecule · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	253	0.73	0.87	33	HEM, OXY

Compared structures

5MJD · metNgb under oxygen at 80 bar · the same entry in another collection · chain A against A, TM-score 1.00
Q9ER97 · AlphaFold monomer V2.0 prediction for neuroglobin (Q9ER97) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9ER97
Elsewhere: RCSB PDB 5MJD · PDBe 5MJD · UniProt Q9ER97

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