MolNFT v1 · #126979 · protein
Extracellular domain of human CD83 - rhombohedral crystal form after UV-rip (S-sad data)
5MJ2 · CD83 antigen: “Extracellular domain of human CD83 - rhombohedral crystal form after UV-rip (S-sad data)”. X-ray diffraction. MolNFT v1 #126979 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5MJ2
- Type
- protein
- Length
- 81 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- CD83 antigen
- UniProt
- Q01151
Structure
x-ray diffraction · 1 distinct chain · 4% helix, 46% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | CD83 antigen | protein | 81 | 4% helix, 46% strand | Q01151 |
Ligands and binding sites
- PEG · Di(hydroxyethyl)ether · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 5MJ2 · Extracellular domain of human CD83 - rhombohedral crystal form after UV-RIP (S-SAD data) · the same entry in another collection · chain A against A, TM-score 1.00
- Q01151 · AlphaFold monomer V2.0 prediction for CD83 antigen (Q01151) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q01151
- Elsewhere: RCSB PDB 5MJ2 · PDBe 5MJ2 · UniProt Q01151
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