MolNFT v1 · #126975 · protein
Crystal structure of the E3 ubiquitin ligase ravn from legionella pneumophila
5MIY: “Crystal structure of the E3 ubiquitin ligase ravn from legionella pneumophila”. X-ray diffraction, 2 ligands (NA, SO4). MolNFT v1 #126975 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5MIY
- Type
- protein
- Length
- 372 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A130MLL2
- Ligands
- NA, SO4
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 127 | — | A0A130MLL2 |
| B | — | protein | 123 | — | A0A130MLL2 |
| C | — | protein | 122 | — | A0A130MLL2 |
Ligands and binding sites
- NA · Sodium ion · metal · 4 copies · chains A, C
- SO4 · Sulfate ion · ion · 13 copies · chains A, B, C
- EDO · 1,2-ethanediol · additive · 5 copies · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5MIY · Crystal structure of the E3 ubiquitin ligase RavN from Legionella pneumophila · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A130MLL2
- Elsewhere: RCSB PDB 5MIY · PDBe 5MIY · UniProt A0A130MLL2
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