MolNFT v1 · #126973 · protein
X-ray structure uridine phosphorylase from vibrio cholerae in complex with uracil at 1.28 a.
5MIW: “X-ray structure uridine phosphorylase from vibrio cholerae in complex with uracil at 1.28 a.”. X-ray diffraction, 4 ligands (URA, NA, CL). MolNFT v1 #126973 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5MIW
- Type
- protein
- Length
- 1,509 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q9K4U1
- Ligands
- URA, NA, CL, SO4
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, F | — | protein | 252 | — | Q9K4U1 |
| C, D, E | — | protein | 251 | — | Q9K4U1 |
Ligands and binding sites
- URA · Uracil · ligand · 6 copies · chains A, B, C, D, E, F
- NA · Sodium ion · metal · 6 copies · chains A, B, F, C, D, E
- CL · Chloride ion · ion · 8 copies · chains A, B, C, D, E, F
- SO4 · Sulfate ion · ion · 2 copies · chains A, C, E, B, D, F
- GOL · Glycerol · additive · 10 copies · chains A, B, C, D, E, F
- EDO · 1,2-ethanediol · additive · 2 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5MIW · X-ray structure uridine phosphorylase from Vibrio cholerae in complex with uracil at 1.28… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9K4U1
- Elsewhere: RCSB PDB 5MIW · PDBe 5MIW · UniProt Q9K4U1
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