MolNFT v1 · #126916 · protein
Product-complex of E.COLI 5-amino laevulinic acid dehydratase
5MHB · Delta-aminolevulinic acid dehydratase: “Product-complex of E.COLI 5-amino laevulinic acid dehydratase”. X-ray diffraction, 2 ligands (PBG, ZN), 2 pockets (best druggability 0.69). MolNFT v1 #126916 on GenesisL1: 3D structure…
- PDB
- 5MHB
- Type
- protein
- Length
- 323 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Delta-aminolevulinic acid dehydratase
- EC
- 4.2.1.24
- UniProt
- P0ACB2
- Ligands
- PBG, ZN
- Pockets
- 2 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Delta-aminolevulinic acid dehydratase (EC 4.2.1.24) | protein | 323 | 42% helix, 17% strand | P0ACB2 |
Ligands and binding sites
- PBG · 3-[5-(aminomethyl)-4-(carboxymethyl)-1H-pyrrol-3-yl]propanoic acid · ligand · chains A
- ZN · Zinc ion · metal · 3 copies · chains A
- GOL · Glycerol · additive · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 51 | 0.69 | 0.97 | 19 | PBG |
| 2 | 168 | 0.60 | 0.83 | 22 | empty |
Compared structures
- 5MHB · Product-Complex of E.coli 5-Amino Laevulinic Acid Dehydratase · the same entry in another collection · chain A against A, TM-score 1.00
- P0ACB2 · AlphaFold monomer V2.0 prediction for delta-aminolevulinic acid dehydratase (P0ACB2) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0ACB2
- Elsewhere: RCSB PDB 5MHB · PDBe 5MHB · UniProt P0ACB2
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