MolNFT v1 · #126713 · protein

Structure of sucrose phosphorylase from bifidobacterium adolescentis bound to nigerose

5MB2: “Structure of sucrose phosphorylase from bifidobacterium adolescentis bound to nigerose”. X-ray diffraction, 1 pocket (best druggability 0.75). MolNFT v1 #126713 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5MB2
Type: protein
Length: 504 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Sucrose phosphorylase
EC: 2.4.1.7
UniProt: Q84HQ2
Pockets: 1 · best druggability 0.75

Structure

x-ray diffraction · 1 distinct chain · 38% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B	Sucrose phosphorylase (EC 2.4.1.7)	protein	504	38% helix, 20% strand	Q84HQ2

Ligands and binding sites

GOL · Glycerol · additive · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	543	0.75	0.83	63	GOL

Compared structures

5MB2 · Structure of sucrose phosphorylase from Bifidobacterium adolescentis bound to nigerose · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q84HQ2
Elsewhere: RCSB PDB 5MB2 · PDBe 5MB2 · UniProt Q84HQ2

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