MolNFT v1 · #126685 · protein

GFP-binding darpin fusion GC_R11

5MA9: “GFP-binding darpin fusion GC_R11”. X-ray diffraction, 1 ligand (CRO). MolNFT v1 #126685 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5MA9
Type: protein
Length: 2,083 residues
Chains: 8
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: P42212
Ligands: CRO

Structure

x-ray diffraction · 4 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B, D, H, F	—	protein	226	—	P42212
A	—	protein	298	—	—
C, G	—	protein	294	—	—
E	—	protein	293	—	—

Ligands and binding sites

CRO · {2-[(1R,2R)-1-amino-2-hydroxypropyl]-4-(4-hydroxybenzylidene)-5-oxo-4,5-dihydro-1H-imidazol-1-yl}acetic acid · ligand · 4 copies · chains B, D, H, F
EDO · 1,2-ethanediol · additive · 11 copies · chains B, A, C, H, D, G, E, F

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5MA9 · GFP-binding DARPin fusion gc_R11 · the same entry in another collection · chain F against F, TM-score 1.00
P42212 · AlphaFold monomer V2.0 prediction for green fluorescent protein (P42212) · a predicted model of the same protein · chain D against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P42212
Elsewhere: RCSB PDB 5MA9 · PDBe 5MA9 · UniProt P42212

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.