MolNFT v1 · #126641 · protein
Pce reductive dehalogenase from S. multivorans in complex with 2,4,5- trichlorophenol
5M8X: “Pce reductive dehalogenase from S. multivorans in complex with 2,4,5- trichlorophenol”. X-ray diffraction, 4 ligands (SF4, BVQ, TC7). MolNFT v1 #126641 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5M8X
- Type
- protein
- Length
- 869 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- W6EQP0
- Ligands
- SF4, BVQ, TC7, BEN
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 449 | — | W6EQP0 |
| B | — | protein | 420 | — | W6EQP0 |
Ligands and binding sites
- SF4 · Iron/sulfur cluster · ligand · 4 copies · chains A, B
- BVQ · Norpseudo-B12 · ligand · 2 copies · chains A, B
- TC7 · 2,4,5-trichlorophenol · ligand · 2 copies · chains A, B
- BEN · Benzamidine · ligand · chains A
- GOL · Glycerol · additive · 9 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5M8X · PCE reductive dehalogenase from S. multivorans in complex with 2,4,5-trichlorophenol · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt W6EQP0
- Elsewhere: RCSB PDB 5M8X · PDBe 5M8X · UniProt W6EQP0
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