MolNFT v1 · #126617 · protein
Crystal structure of eremococcus coleocola manganese transporter
5M87 · Divalent metal cation transporter mnth: “Crystal structure of eremococcus coleocola manganese transporter”. X-ray diffraction, 7 pockets (best druggability 0.74). MolNFT v1 #126617 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5M87
- Type
- protein
- Length
- 494 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Divalent metal cation transporter mnth
- UniProt
- E4KPW4
- Pockets
- 7 · best druggability 0.74
Structure
x-ray diffraction · 1 distinct chain · 77% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Divalent metal cation transporter mnth | protein | 494 | 77% helix, 0% strand | E4KPW4 |
Ligands and binding sites
- DMU · Decyl-beta-D-maltopyranoside · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 608 | 0.74 | 0.81 | 58 | empty |
| 2 | 103 | 0.58 | 0.85 | 16 | empty |
| 3 | 77 | 0.57 | 0.87 | 23 | empty |
| 4 | 59 | 0.39 | 0.80 | 18 | empty |
| 5 | 90 | 0.36 | 0.74 | 19 | empty |
Compared structures
- 5M87 · Crystal structure of Eremococcus coleocola manganese transporter · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt E4KPW4
- Elsewhere: RCSB PDB 5M87 · PDBe 5M87 · UniProt E4KPW4
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