MolNFT v1 · #126612 · protein

Three-dimensional structure of the photoproduct state of GAF3 from SLR1393 of synechocystis sp. PCC6803

5M82 · Sensory transduction histidine kinase: “Three-dimensional structure of the photoproduct state of GAF3 from SLR1393 of synechocystis sp. PCC6803”. X-ray diffraction, 3 ligands (CYC, 3CX, NA), 1 pocket (best druggability 0.71). MolNFT…

PDB: 5M82
Type: protein
Length: 158 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Sensory transduction histidine kinase
UniProt: P73184
Ligands: CYC, 3CX, NA
Pockets: 1 · best druggability 0.71

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Sensory transduction histidine kinase	protein	158	41% helix, 25% strand	P73184

Ligands and binding sites

CYC · Phycocyanobilin · ligand · chains A
3CX · (2S)-3-(cyclohexylamino)-2-hydroxypropane-1-sulfonic acid · ligand · chains A
NA · Sodium ion · metal · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	414	0.71	0.82	37	CYC, NA

Modifications

Observed in the structure: 1 cofactor (phycocyanobilin attachment).

Compared structures

5M82 · Three-dimensional structure of the photoproduct state of GAF3 from Slr1393 of… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P73184
Elsewhere: RCSB PDB 5M82 · PDBe 5M82 · UniProt P73184

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