MolNFT v1 · #126602 · protein
Structure of human O-glcnac hydrolase with bound transition state analog thiametg
5M7S: “Structure of human O-glcnac hydrolase with bound transition state analog thiametg”. X-ray diffraction, 1 ligand (NHT). MolNFT v1 #126602 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5M7S
- Type
- protein
- Length
- 887 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- O60502
- Ligands
- NHT
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 443 | — | O60502 |
| B | — | protein | 444 | — | O60502 |
Ligands and binding sites
- NHT · (3ar,5r,6s,7r,7ar)-2-(ethylamino)-5-(hydroxymethyl)-5, 6,7,7A-tetrahydro-3AH-pyrano[3,2-d][1,3]thiazole-6,7-diol · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5M7S · Structure of human O-GlcNAc hydrolase with bound transition state analog ThiametG · the same entry in another collection · chain A against A, TM-score 1.00
- O60502 · AlphaFold monomer V2.0 prediction for protein O-glcnacase (O60502) · a predicted model of the same protein · chain B against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O60502
- Elsewhere: RCSB PDB 5M7S · PDBe 5M7S · UniProt O60502
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