MolNFT v1 · #126542 · protein

Chaetomium thermophilum beta-1-3-glucanase

5M60 · Beta-1,3-glucanase: “Chaetomium thermophilum beta-1-3-glucanase”. X-ray diffraction, 3 ligands (NAG, BGC, NA), 2 pockets (best druggability 0.48). MolNFT v1 #126542 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5M60
Type: protein
Length: 755 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Beta-1,3-glucanase
UniProt: D8UU87
Ligands: NAG, BGC, NA
Pockets: 2 · best druggability 0.48

Structure

x-ray diffraction · 1 distinct chain · 9% helix, 45% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Beta-1,3-glucanase	protein	755	9% helix, 45% strand	D8UU87

Ligands and binding sites

NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 4 copies · chains A
BGC · beta-D-glucopyranose · sugar · chains A
NA · Sodium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	140	0.48	0.78	23	BGC, NA
2	78	0.33	0.75	22	empty

Modifications

Observed in the structure: 4 disulfide, 2 glycan, 1 modified (disulfide, N-glycosylation, cyclization).

Compared structures

5M60 · Chaetomium thermophilum beta-1-3-glucanase · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt D8UU87
Elsewhere: RCSB PDB 5M60 · PDBe 5M60 · UniProt D8UU87

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