MolNFT v1 · #126458 · protein
Single-particle cryo-EM using alignment by classification (ABC): the structure of lumbricus terrestris hemoglobin
5M3L: “Single-particle cryo-EM using alignment by classification (ABC): the structure of lumbricus terrestris…”. Electron microscopy, 1 ligand (HEM). MolNFT v1 #126458 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5M3L
- Type
- protein
- Length
- 2,394 residues
- Chains
- 15
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P13579, P02218, P11069, O61233, Q9GV76, Q2I743, Q2I742
- Ligands
- HEM
Structure
electron microscopy · 8 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, E, I | — | protein | 147 | — | P13579 |
| B, F | — | protein | 145 | — | P02218 |
| C, G, K | — | protein | 149 | — | P11069 |
| D, H, L | — | protein | 140 | — | O61233 |
| J | — | protein | 144 | — | P02218 |
| M | — | protein | 217 | — | Q9GV76 |
| N | — | protein | 220 | — | Q2I743 |
| O | — | protein | 215 | — | Q2I742 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · 12 copies · chains A, D, B, C, E, H, F, G, I, L, J, K
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5M3L · Single-particle cryo-EM using alignment by classification (ABC): the structure of… · the same entry in another collection · chain O against O, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P13579
- Every structure of UniProt P02218
- Every structure of UniProt P11069
- Every structure of UniProt O61233
- Every structure of UniProt Q9GV76
- Every structure of UniProt Q2I743
- Every structure of UniProt Q2I742
- Elsewhere: RCSB PDB 5M3L · PDBe 5M3L · UniProt P13579 · UniProt P02218 · UniProt P11069 · UniProt O61233 · UniProt Q9GV76 · UniProt Q2I743 · UniProt Q2I742
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