MolNFT v1 · #126446 · protein
Structure of the tagl peptidoglycan binding domain from eaec T6SS
5M38 · Ompa family protein: “Structure of the tagl peptidoglycan binding domain from eaec T6SS”. X-ray diffraction, 1 pocket (best druggability 0.69). MolNFT v1 #126446 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5M38
- Type
- protein
- Length
- 339 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ompa family protein
- UniProt
- A0A0P7P0J8
- Pockets
- 1 · best druggability 0.69
Structure
x-ray diffraction · 3 distinct chains · 42% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ompa family protein | protein | 113 | 42% helix, 20% strand | A0A0P7P0J8 |
| B | Ompa family protein | protein | 112 | 43% helix, 21% strand | A0A0P7P0J8 |
| C | Ompa family protein | protein | 114 | 42% helix, 22% strand | A0A0P7P0J8 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 514 | 0.69 | 0.79 | 49 | empty |
Interfaces
2 interfaces between chains.
- B–C · 522 Ų buried · 5 hydrogen bonds · protein-protein
- A–B · 261 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 5M38 · Structure of the TagL peptidoglycan binding domain from EAEC T6SS · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0P7P0J8
- Elsewhere: RCSB PDB 5M38 · PDBe 5M38 · UniProt A0A0P7P0J8
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