MolNFT v1 · #126425 · protein

Crystal structure of elongator subunit ELP2

5M2N · Elongator complex protein 2: “Crystal structure of elongator subunit ELP2”. X-ray diffraction, 8 pockets (best druggability 0.77). MolNFT v1 #126425 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5M2N
Type: protein
Length: 711 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Elongator complex protein 2
UniProt: P42935
Pockets: 8 · best druggability 0.77

Structure

x-ray diffraction · 1 distinct chain · 3% helix, 55% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Elongator complex protein 2	protein	711	3% helix, 55% strand	P42935

Pockets

8 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	395	0.77	0.86	50	empty
2	280	0.71	0.85	32	empty
3	50	0.69	0.98	27	empty
4	200	0.58	0.80	23	empty
5	69	0.43	0.81	15	empty

Modifications

Observed in the structure: 10 modified (engineered).

Compared structures

5M2N · Crystal Structure of Elongator subunit Elp2 · the same entry in another collection · chain A against A, TM-score 1.00
P42935 · AlphaFold monomer V2.0 prediction for elongator complex protein 2 (P42935) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P42935
Elsewhere: RCSB PDB 5M2N · PDBe 5M2N · UniProt P42935

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