MolNFT v1 · #126410 · protein
Maltodextrin binding protein MALE1 from L. casei BL23 bound to maltotriose
5M28: “Maltodextrin binding protein MALE1 from L. casei BL23 bound to maltotriose”. X-ray diffraction, 2 ligands (GLC, CL), 4 pockets (best druggability 0.60). MolNFT v1 #126410 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5M28
- Type
- protein
- Length
- 372 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- MALE1
- UniProt
- B0L7B0
- Ligands
- GLC, CL
- Pockets
- 4 · best druggability 0.60
Structure
x-ray diffraction · 1 distinct chain · 49% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | MALE1 | protein | 372 | 49% helix, 21% strand | B0L7B0 |
Ligands and binding sites
- GLC · alpha-D-glucopyranose · sugar · 3 copies · chains A
- CL · Chloride ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 428 | 0.60 | 0.76 | 45 | GLC |
| 2 | 102 | 0.42 | 0.77 | 19 | empty |
| 3 | 56 | 0.39 | 0.80 | 19 | empty |
| 4 | 51 | 0.33 | 0.78 | 15 | empty |
Compared structures
- 5M28 · Maltodextrin binding protein MalE1 from L. casei BL23 bound to maltotriose · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B0L7B0
- Elsewhere: RCSB PDB 5M28 · PDBe 5M28 · UniProt B0L7B0
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