MolNFT v1 · #126389 · DNA

Structure of DNA agcga-quadruplex adopted by 15-mer D(GCGAGGGAGCGAGGG), VK34, oligonucleotide found in regulatory region of the PLEKHG3 human gene

5M1L · DNA (5'-D(*GP*CP*GP*AP*GP*GP*GP*AP*GP*CP*GP*AP*GP*GP*G)- 3'): “Structure of DNA agcga-quadruplex adopted by 15-mer D(GCGAGGGAGCGAGGG), VK34, oligonucleotide found in…”. Solution nmr. MolNFT v1 #126389 on GenesisL1: 3D structure…

PDB: 5M1L
Type: DNA
Length: 30 nucleotides
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA (5'-D(*GP*CP*GP*AP*GP*GP*GP*AP*GP*CP*GP*AP*GP*GP*G)- 3')

Structure

solution nmr · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	DNA (5'-D(GPCPGPAPGPGPGPAPGPCPGPAPGPGP*G)- 3')	dna	15	—	—

Interfaces

1 interface between chains.

A–B · 716 Å² buried · 70 hydrogen bonds · nucleic-nucleic

Compared structures

5M1L · Structure of DNA AGCGA-quadruplex adopted by 15-mer d(GCGAGGGAGCGAGGG), VK34… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 5M1L · PDBe 5M1L

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