MolNFT v1 · #126352 · protein + RNA
Crystal structure of the nuclear complex with SHE2P and the ASH1 mRNA E3-localization element
5M0I: “Crystal structure of the nuclear complex with SHE2P and the ASH1 mRNA E3-localization element”. X-ray diffraction, 1 ligand (MG). MolNFT v1 #126352 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5M0I
- Type
- protein + RNA
- Length
- 1,016 residues
- Chains
- 9
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- B3LQW9, P38272
- Ligands
- MG
Structure
x-ray diffraction · 7 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| D | — | protein | 235 | — | B3LQW9 |
| C | — | protein | 240 | — | B3LQW9 |
| B | — | protein | 238 | — | B3LQW9 |
| A | — | protein | 225 | — | B3LQW9 |
| E, F | — | rna | 28 | — | — |
| H | — | protein | 8 | — | P38272 |
| J, I | — | protein | 7 | — | P38272 |
Ligands and binding sites
- MG · Magnesium ion · metal · 6 copies · chains D, C, B, A, F
- EDO · 1,2-ethanediol · additive · 11 copies · chains D, C, F, B, A, E
- ACT · Acetate ion · additive · 6 copies · chains D, B, E, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5M0I · Crystal structure of the nuclear complex with She2p and the ASH1 mRNA E3-localization… · the same entry in another collection · chain I against I, TM-score 1.00
- B3LQW9 · AlphaFold monomer V2.0 prediction for SWI5-dependent ho expression protein 2 (B3LQW9) · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B3LQW9
- Every structure of UniProt P38272
- Elsewhere: RCSB PDB 5M0I · PDBe 5M0I · UniProt B3LQW9 · UniProt P38272
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