MolNFT v1 · #126289 · protein

Structure of the CBM2 module of lactobacillus casei BL23 phage J-1 evolved dit.

5LY8 · Tail component: “Structure of the CBM2 module of lactobacillus casei BL23 phage J-1 evolved dit.”. X-ray diffraction, 1 ligand (MG), 2 pockets (best druggability 0.44). MolNFT v1 #126289 on GenesisL1: 3D structure, binding sites and…

PDB: 5LY8
Type: protein
Length: 230 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Tail component
UniProt: U5U3S0
Ligands: MG
Pockets: 2 · best druggability 0.44

Structure

x-ray diffraction · 1 distinct chain · 4% helix, 54% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Tail component	protein	230	4% helix, 54% strand	U5U3S0

Ligands and binding sites

MG · Magnesium ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	101	0.44	0.79	27	empty
2	83	0.44	0.80	28	empty

Compared structures

5LY8 · Structure of the CBM2 module of Lactobacillus casei BL23 phage J-1 evolved Dit. · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt U5U3S0
Elsewhere: RCSB PDB 5LY8 · PDBe 5LY8 · UniProt U5U3S0

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