MolNFT v1 · #126254 · protein
Crystal structure of BT1762
5LX8 · Susd homolog: “Crystal structure of BT1762”. X-ray diffraction, 2 ligands (NA, SO4), 5 pockets (best druggability 0.81). MolNFT v1 #126254 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5LX8
- Type
- protein
- Length
- 532 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Susd homolog
- UniProt
- Q8A6W4
- Ligands
- NA, SO4
- Pockets
- 5 · best druggability 0.81
Structure
x-ray diffraction · 1 distinct chain · 45% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Susd homolog | protein | 532 | 45% helix, 9% strand | Q8A6W4 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 179 | 0.81 | 0.95 | 33 | empty |
| 2 | 143 | 0.46 | 0.77 | 19 | empty |
| 3 | 94 | 0.41 | 0.77 | 15 | empty |
| 4 | 107 | 0.41 | 0.76 | 16 | empty |
| 5 | 91 | 0.38 | 0.76 | 19 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 5LX8 · Crystal structure of BT1762 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8A6W4
- Elsewhere: RCSB PDB 5LX8 · PDBe 5LX8 · UniProt Q8A6W4
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