MolNFT v1 · #126121 · protein
Phosphate-bound pichia angusta ATG18
5LTD · Autophagy-related protein 18: “Phosphate-bound pichia angusta ATG18”. X-ray diffraction, 1 ligand (PO4), 4 pockets (best druggability 0.77). MolNFT v1 #126121 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5LTD
- Type
- protein
- Length
- 630 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Autophagy-related protein 18
- UniProt
- Q5QA94
- Ligands
- PO4
- Pockets
- 4 · best druggability 0.77
Structure
x-ray diffraction · 2 distinct chains · 0% helix, 59% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Autophagy-related protein 18 | protein | 315 | 0% helix, 59% strand | Q5QA94 |
| B | Autophagy-related protein 18 | protein | 315 | 0% helix, 59% strand | Q5QA94 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 649 | 0.77 | 0.83 | 55 | empty |
| 2 | 585 | 0.77 | 0.84 | 58 | empty |
| 3 | 291 | 0.75 | 0.87 | 41 | empty |
| 4 | 193 | 0.49 | 0.76 | 28 | empty |
Interfaces
1 interface between chains.
- A–B · 481 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5QA94
- Elsewhere: RCSB PDB 5LTD · PDBe 5LTD · UniProt Q5QA94
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