MolNFT v1 · #126104 · protein
X-ray crystal structure of AA13 lpmo
5LSV · AOAA13: “X-ray crystal structure of AA13 lpmo”. X-ray diffraction, 3 ligands (GLC, NAG, ZN). MolNFT v1 #126104 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5LSV
- Type
- protein
- Length
- 233 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- AOAA13
- UniProt
- Q2U8Y3
- Ligands
- GLC, NAG, ZN
Structure
x-ray diffraction · 1 distinct chain · 17% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | AOAA13 | protein | 233 | 17% helix, 27% strand | Q2U8Y3 |
Ligands and binding sites
- GLC · alpha-D-glucopyranose · sugar · 2 copies · chains A
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A
- ZN · Zinc ion · metal · 8 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 7 disulfide, 1 glycan, 1 modified (disulfide, N-glycosylation, methylation).
Compared structures
- 5LSV · X-ray crystal structure of AA13 LPMO · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q2U8Y3
- Elsewhere: RCSB PDB 5LSV · PDBe 5LSV · UniProt Q2U8Y3
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