MolNFT v1 · #126064 · protein

BRD4 in complex with ERK5 inhibitor XMD8-92

5LRQ: “BRD4 in complex with ERK5 inhibitor XMD8-92”. X-ray diffraction, 1 ligand (4WG). MolNFT v1 #126064 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5LRQ
Type: protein
Length: 122 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt: O60885
Ligands: 4WG

Structure

x-ray diffraction · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	—	protein	122	—	O60885

Ligands and binding sites

4WG · 2-{[2-ethoxy-4-(4-hydroxypiperidin-1-yl)phenyl]amino}-5,11-dimethyl-5,11-dihydro-6H-pyrimido[4,5-B][1, 4]benzodiazepin-6-one · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5LRQ · BRD4 in complex with ERK5 inhibitor XMD8-92 · the same entry in another collection · chain A against A, TM-score 1.00
O60885 · AlphaFold monomer V2.0 prediction for bromodomain-containing protein 4 (O60885) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O60885
Elsewhere: RCSB PDB 5LRQ · PDBe 5LRQ · UniProt O60885

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