MolNFT v1 · #126026 · protein
W288A mutant of glxa from streptomyces lividans: apo form
5LQI · Secreted protein: “W288A mutant of glxa from streptomyces lividans: apo form”. X-ray diffraction, 14 pockets (best druggability 0.79). MolNFT v1 #126026 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5LQI
- Type
- protein
- Length
- 1,208 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Secreted protein
- UniProt
- D6EWM0
- Pockets
- 14 · best druggability 0.79
Structure
x-ray diffraction · 2 distinct chains · 7% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Secreted protein | protein | 599 | 7% helix, 38% strand | D6EWM0 |
| B | Secreted protein | protein | 609 | 7% helix, 38% strand | D6EWM0 |
Pockets
14 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 145 | 0.79 | 0.96 | 39 | empty |
| 2 | 117 | 0.78 | 0.97 | 28 | empty |
| 3 | 135 | 0.65 | 0.87 | 34 | empty |
| 4 | 128 | 0.63 | 0.87 | 30 | empty |
| 5 | 306 | 0.57 | 0.77 | 30 | empty |
Interfaces
1 interface between chains.
- A–B · 121 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
- 5LQI · W288A mutant of GlxA from Streptomyces lividans: apo form · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D6EWM0
- Elsewhere: RCSB PDB 5LQI · PDBe 5LQI · UniProt D6EWM0
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