MolNFT v1 · #125970 · protein
Helical assembly of the anbu complex from pseudomonas aeruginosa
5LOX · Peptidase: “Helical assembly of the anbu complex from pseudomonas aeruginosa”. X-ray diffraction, 20 pockets (best druggability 0.78). MolNFT v1 #125970 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5LOX
- Type
- protein
- Length
- 8,194 residues
- Chains
- 34
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Peptidase
- UniProt
- A0A0D6I0H1
- Pockets
- 20 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, 1, 2, 3, 4, 5, 6, 7, 8 | Peptidase | protein | 241 | 34% helix, 28% strand | A0A0D6I0H1 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 98 | 0.78 | 0.98 | 20 | empty |
| 2 | 94 | 0.78 | 0.98 | 20 | empty |
| 3 | 92 | 0.78 | 0.99 | 20 | empty |
| 4 | 97 | 0.78 | 0.98 | 20 | empty |
| 5 | 800 | 0.78 | 0.81 | 95 | empty |
Interfaces
74 interfaces between chains.
- U–V · 2323 Ų buried · 23 hydrogen bonds · protein-protein
- K–L · 2305 Ų buried · 23 hydrogen bonds · protein-protein
- 5–6 · 2301 Ų buried · 22 hydrogen bonds · protein-protein
- W–X · 2292 Ų buried · 21 hydrogen bonds · protein-protein
- E–F · 2289 Ų buried · 22 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 170 modified (engineered).
Compared structures
- 5LOX · Helical Assembly of the Anbu Complex from Pseudomonas aeruginosa · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0D6I0H1
- Elsewhere: RCSB PDB 5LOX · PDBe 5LOX · UniProt A0A0D6I0H1
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