MolNFT v1 · #125905 · protein
Fluorinase from streptomyces sp. MA37
5LMZ: “Fluorinase from streptomyces sp. MA37”. X-ray diffraction, 2 ligands (1DA, CL), 2 pockets (best druggability 0.63). MolNFT v1 #125905 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5LMZ
- Type
- protein
- Length
- 563 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Fluorinase
- UniProt
- W0W999
- Ligands
- 1DA, CL
- Pockets
- 2 · best druggability 0.63
Structure
x-ray diffraction · 2 distinct chains · 22% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Fluorinase | protein | 281 | 23% helix, 29% strand | W0W999 |
| B | Fluorinase | protein | 282 | 21% helix, 29% strand | W0W999 |
Ligands and binding sites
- 1DA · 1-deaza-adenosine · ligand · 2 copies · chains A, B
- CL · Chloride ion · ion · 3 copies · chains A, B
- GOL · Glycerol · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 359 | 0.63 | 0.79 | 45 | empty |
| 2 | 132 | 0.54 | 0.82 | 26 | empty |
Compared structures
- 5LMZ · Fluorinase from Streptomyces sp. MA37 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt W0W999
- Elsewhere: RCSB PDB 5LMZ · PDBe 5LMZ · UniProt W0W999
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