MolNFT v1 · #125828 · protein
Protease domain of rada
5LKQ · DNA repair protein rada: “Protease domain of rada”. X-ray diffraction, 3 pockets (best druggability 0.53). MolNFT v1 #125828 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5LKQ
- Type
- protein
- Length
- 353 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA repair protein rada
- UniProt
- A0A0T7K9X0
- Pockets
- 3 · best druggability 0.53
Structure
x-ray diffraction · 2 distinct chains · 35% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA repair protein rada | protein | 176 | 35% helix, 30% strand | A0A0T7K9X0 |
| B | DNA repair protein rada | protein | 177 | 35% helix, 30% strand | A0A0T7K9X0 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 182 | 0.53 | 0.78 | 22 | empty |
| 2 | 79 | 0.49 | 0.83 | 22 | empty |
| 3 | 128 | 0.43 | 0.76 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 998 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 5LKQ · Protease domain of RadA · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0T7K9X0
- Elsewhere: RCSB PDB 5LKQ · PDBe 5LKQ · UniProt A0A0T7K9X0
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