MolNFT v1 · #125794 · protein

Structure of SPATA2 pub domain

5LJM · Spermatogenesis-associated protein 2: “Structure of SPATA2 pub domain”. X-ray diffraction, 2 pockets (best druggability 0.32). MolNFT v1 #125794 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5LJM
Type: protein
Length: 203 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Spermatogenesis-associated protein 2
UniProt: Q9UM82
Pockets: 2 · best druggability 0.32

Structure

x-ray diffraction · 1 distinct chain · 67% helix, 5% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Spermatogenesis-associated protein 2	protein	203	67% helix, 5% strand	Q9UM82

Ligands and binding sites

GOL · Glycerol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	53	0.32	0.77	13	empty
2	53	0.30	0.75	14	empty

Compared structures

5LJM · Structure of SPATA2 PUB domain · the same entry in another collection · chain A against A, TM-score 1.00
Q9UM82 · AlphaFold monomer V2.0 prediction for spermatogenesis-associated protein 2 (Q9UM82) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9UM82
Elsewhere: RCSB PDB 5LJM · PDBe 5LJM · UniProt Q9UM82

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.