MolNFT v1 · #125789 · protein

Crystal structure of human apo CRBP1/K40L mutant

5LJH · Retinol-binding protein 1: “Crystal structure of human apo CRBP1/K40L mutant”. X-ray diffraction, 1 ligand (NA), 1 pocket (best druggability 0.81). MolNFT v1 #125789 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5LJH
Type: protein
Length: 134 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Retinol-binding protein 1
UniProt: P09455
Ligands: NA
Pockets: 1 · best druggability 0.81

Structure

x-ray diffraction · 1 distinct chain · 12% helix, 54% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Retinol-binding protein 1	protein	134	12% helix, 54% strand	P09455

Ligands and binding sites

NA · Sodium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	262	0.81	0.93	36	empty

Compared structures

5LJH · Crystal structure of human apo CRBP1/K40L mutant · the same entry in another collection · chain A against A, TM-score 1.00
P09455 · AlphaFold monomer V2.0 prediction for retinol-binding protein 1 (P09455) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P09455
Elsewhere: RCSB PDB 5LJH · PDBe 5LJH · UniProt P09455

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