MolNFT v1 · #125753 · DNA
G-quadruplex formed at the 5'-end of NHEIII_1 element in human C-myc promoter bound to triangulenium based fluorescence probe daota-M2
5LIG · DNA (5'- D(*TP*AP*GP*GP*GP*AP*GP*GP*GP*TP*AP*GP*GP*GP*AP*GP*…: “G-quadruplex formed at the 5'-end of NHEIII_1 element in human C-myc promoter bound to triangulenium based…”. Solution nmr, 1 ligand (6XM). MolNFT v1 #125753 on…
- PDB
- 5LIG
- Type
- DNA
- Length
- 19 nucleotides
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA (5'- D(*TP*AP*GP*GP*GP*AP*GP*GP*GP*TP*AP*GP*GP*GP*AP*GP*GP*GP*T)-3')
- Ligands
- 6XM
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA (5'- D(*TP*AP*GP*GP*GP*AP*GP*GP*GP*TP*AP*GP*GP*GP*AP*GP*GP*GP*T)-3') | dna | 19 | — | — |
Ligands and binding sites
- 6XM · 8,12-bis(2-morpholinoethyl)-8H-benzo[ij]xantheno[1,9,8-cdef][2,7]naphthyridin-12-iumhexafluorophosphate · ligand · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5LIG · G-Quadruplex formed at the 5'-end of NHEIII_1 Element in human c-MYC promoter bound to… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5LIG · PDBe 5LIG
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