MolNFT v1 · #125744 · protein
Bacteriophage PHI812K1-420 tail sheath protein after contraction
5LI4: “Bacteriophage PHI812K1-420 tail sheath protein after contraction”. Electron microscopy, 20 pockets (best druggability 0.76). MolNFT v1 #125744 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5LI4
- Type
- protein
- Length
- 2,562 residues
- Chains
- 6
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tail sheath protein
- UniProt
- A0A0U1WZ79
- Pockets
- 20 · best druggability 0.76
Structure
electron microscopy · 1 distinct chain · 26% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F | Tail sheath protein | protein | 427 | 26% helix, 19% strand | A0A0U1WZ79 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 645 | 0.76 | 0.82 | 84 | empty |
| 2 | 438 | 0.75 | 0.84 | 58 | empty |
| 3 | 451 | 0.75 | 0.84 | 60 | empty |
| 4 | 429 | 0.75 | 0.84 | 59 | empty |
| 5 | 516 | 0.75 | 0.83 | 70 | empty |
Compared structures
- 5LI4 · bacteriophage phi812K1-420 tail sheath protein after contraction · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0U1WZ79
- Elsewhere: RCSB PDB 5LI4 · PDBe 5LI4 · UniProt A0A0U1WZ79
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