MolNFT v1 · #125725 · protein
Bottromycin maturation enzyme botp in complex with mn
5LHK · Leucine aminopeptidase 2, chloroplastic: “Bottromycin maturation enzyme botp in complex with mn”. X-ray diffraction, 2 ligands (BCT, MN), 3 pockets (best druggability 0.69). MolNFT v1 #125725 on GenesisL1: 3D structure, binding…
- PDB
- 5LHK
- Type
- protein
- Length
- 455 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Leucine aminopeptidase 2, chloroplastic
- EC
- 3.4.11.-, 3.4.11.1
- UniProt
- K4MHW2
- Ligands
- BCT, MN
- Pockets
- 3 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Leucine aminopeptidase 2, chloroplastic (EC 3.4.11.-, 3.4.11.1) | protein | 455 | 38% helix, 20% strand | K4MHW2 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 445 | 0.69 | 0.80 | 56 | empty |
| 2 | 53 | 0.48 | 0.86 | 19 | empty |
| 3 | 74 | 0.38 | 0.78 | 11 | empty |
Compared structures
- 5LHK · Bottromycin maturation enzyme BotP in complex with Mn · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt K4MHW2
- Elsewhere: RCSB PDB 5LHK · PDBe 5LHK · UniProt K4MHW2
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