MolNFT v1 · #125719 · protein

Phosphoribosyl anthranilate isomerase from thermococcus kodakaraensis

5LHE · N-(5'-PHOSPHORIBOSYL)ANTHRANILATE isomerase: “Phosphoribosyl anthranilate isomerase from thermococcus kodakaraensis”. X-ray diffraction, 1 ligand (NA), 1 pocket (best druggability 0.53). MolNFT v1 #125719 on GenesisL1: 3D structure…

PDB: 5LHE
Type: protein
Length: 207 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: N-(5'-PHOSPHORIBOSYL)ANTHRANILATE isomerase
EC: 5.3.1.24
UniProt: Q9YGB1
Ligands: NA
Pockets: 1 · best druggability 0.53

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	N-(5'-PHOSPHORIBOSYL)ANTHRANILATE isomerase (EC 5.3.1.24)	protein	207	41% helix, 21% strand	Q9YGB1

Ligands and binding sites

NA · Sodium ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	178	0.53	0.79	25	empty

Compared structures

5LHE · Phosphoribosyl anthranilate isomerase from Thermococcus kodakaraensis · the same entry in another collection · chain A against A, TM-score 1.00
Q9YGB1 · AlphaFold monomer V2.0 prediction for N-(5'-PHOSPHORIBOSYL)ANTHRANILATE isomerase (Q9YGB1) · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9YGB1
Elsewhere: RCSB PDB 5LHE · PDBe 5LHE · UniProt Q9YGB1

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