MolNFT v1 · #125652 · protein
X-ray structure of a new fully ligated carbomonoxy form of trematomus newnesi hemoglobin (HB1TNCO).
5LFG: “X-ray structure of a new fully ligated carbomonoxy form of trematomus newnesi hemoglobin (HB1TNCO).”. X-ray diffraction, 3 ligands (HEM, ACE, CMO). MolNFT v1 #125652 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5LFG
- Type
- protein
- Length
- 572 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P45718, P45720
- Ligands
- HEM, ACE, CMO
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | — | protein | 142 | — | P45718 |
| B | — | protein | 146 | — | P45720 |
| D | — | protein | 142 | — | P45720 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · 4 copies · chains A, B, C, D
- ACE · Acetyl group · ligand · 2 copies · chains A, C
- CMO · Carbon monoxide · ion · 4 copies · chains A, B, C, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5LFG · X-ray structure of a new fully ligated carbomonoxy form of Trematomus newnesi hemoglobin… · the same entry in another collection · chain A against A, TM-score 1.00
- P45718 · AlphaFold monomer V2.0 prediction for hemoglobin subunit alpha-1 (P45718) · a predicted model of the same protein · chain A against A, TM-score 1.00
- P45720 · AlphaFold monomer V2.0 prediction for hemoglobin subunit beta-1/2 (P45720) · a predicted model of the same protein · chain D against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P45718
- Every structure of UniProt P45720
- Elsewhere: RCSB PDB 5LFG · PDBe 5LFG · UniProt P45718 · UniProt P45720
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