MolNFT v1 · #125649 · protein
Crystal structure of allantoin racemase from pseudomonas fluorescens allr
5LFD: “Crystal structure of allantoin racemase from pseudomonas fluorescens allr”. X-ray diffraction, 3 pockets (best druggability 0.71). MolNFT v1 #125649 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5LFD
- Type
- protein
- Length
- 470 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Allantoin racemase
- EC
- 5.1.99.3
- UniProt
- E3SAZ9
- Pockets
- 3 · best druggability 0.71
Structure
x-ray diffraction · 1 distinct chain · 46% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Allantoin racemase (EC 5.1.99.3) | protein | 235 | 46% helix, 15% strand | E3SAZ9 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 52 | 0.71 | 0.99 | 18 | empty |
| 2 | 120 | 0.58 | 0.85 | 35 | empty |
| 3 | 52 | 0.32 | 0.77 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 1953 Ų buried · 27 hydrogen bonds · protein-protein
Compared structures
- 5LFD · Crystal structure of allantoin racemase from Pseudomonas fluorescens AllR · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt E3SAZ9
- Elsewhere: RCSB PDB 5LFD · PDBe 5LFD · UniProt E3SAZ9
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