MolNFT v1 · #125624 · protein

Crystal structure of darpin-darpin rigid fusion, variant DDD_D12_12_D12_12_D12

5LED: “Crystal structure of darpin-darpin rigid fusion, variant DDD_D12_12_D12_12_D12”. X-ray diffraction, 2 pockets (best druggability 0.30). MolNFT v1 #125624 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5LED
Type: protein
Length: 455 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DDD_D12_12_D12_12_D12
Pockets: 2 · best druggability 0.30

Structure

x-ray diffraction · 1 distinct chain · 55% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	DDD_D12_12_D12_12_D12	protein	455	55% helix, 0% strand	—

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	59	0.30	0.75	11	empty
2	51	0.30	0.76	10	empty

Compared structures

5LED · Crystal structure of DARPin-DARPin rigid fusion, variant DDD_D12_12_D12_12_D12 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 5LED · PDBe 5LED

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