MolNFT v1 · #125623 · protein
Crystal structure of darpin-darpin rigid fusion, variant DDD_D12_12_D12_12_D12
5LEC: “Crystal structure of darpin-darpin rigid fusion, variant DDD_D12_12_D12_12_D12”. X-ray diffraction, 2 pockets (best druggability 0.27). MolNFT v1 #125623 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5LEC
- Type
- protein
- Length
- 474 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DDD_D12_12_D12_12_D12
- Pockets
- 2 · best druggability 0.27
Structure
x-ray diffraction · 1 distinct chain · 58% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DDD_D12_12_D12_12_D12 | protein | 474 | 58% helix, 0% strand | — |
Ligands and binding sites
- B3P · 2-[3-(2-hydroxy-1,1-dihydroxymethyl-ethylamino)-propylamino]-2-hydroxymethyl-propane-1,3-diol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 59 | 0.27 | 0.73 | 13 | empty |
| 2 | 53 | 0.26 | 0.73 | 13 | empty |
Compared structures
- 5LEC · Crystal structure of DARPin-DARPin rigid fusion, variant DDD_D12_12_D12_12_D12 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 5LEC · PDBe 5LEC
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