MolNFT v1 · #125621 · protein

Crystal structure of darpin-darpin rigid fusion, variant DD_OFF7_12_3G124

5LEA: “Crystal structure of darpin-darpin rigid fusion, variant DD_OFF7_12_3G124”. X-ray diffraction, 2 pockets (best druggability 0.36). MolNFT v1 #125621 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5LEA
Type: protein
Length: 316 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DD_OFF7_12_3G124
Pockets: 2 · best druggability 0.36

Structure

x-ray diffraction · 1 distinct chain · 56% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	DD_OFF7_12_3G124	protein	316	56% helix, 0% strand	—

Ligands and binding sites

MPD · (4S)-2-methyl-2,4-pentanediol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	65	0.36	0.77	17	empty
2	69	0.35	0.77	12	empty

Compared structures

5LEA · Crystal structure of DARPin-DARPin rigid fusion, variant DD_Off7_12_3G124 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 5LEA · PDBe 5LEA

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