MolNFT v1 · #125596 · protein

Myristoylated T41I/T78I mutant of M-pmv matrix protein

5LDL · Myristoylated M-pmv matrix protein mutant: “Myristoylated T41I/T78I mutant of M-pmv matrix protein”. Solution nmr, 1 ligand (MYR), 2 pockets (best druggability 0.79). MolNFT v1 #125596 on GenesisL1: 3D structure, binding sites and…

PDB: 5LDL
Type: protein
Length: 124 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Myristoylated M-pmv matrix protein mutant
UniProt: P07567
Ligands: MYR
Pockets: 2 · best druggability 0.79

Structure

solution nmr · 1 distinct chain · 57% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Myristoylated M-pmv matrix protein mutant	protein	124	57% helix, 0% strand	P07567

Ligands and binding sites

MYR · Myristic acid · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	445	0.79	0.87	50	MYR
2	149	0.54	0.80	15	empty

Modifications

Observed in the structure: 1 lipid (myristoylation).

Compared structures

5LDL · Myristoylated T41I/T78I mutant of M-PMV matrix protein · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P07567
Elsewhere: RCSB PDB 5LDL · PDBe 5LDL · UniProt P07567

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