MolNFT v1 · #125575 · protein
Structural basis of zika and dengue virus potent antibody cross- neutralization
5LCV: “Structural basis of zika and dengue virus potent antibody cross- neutralization”. X-ray diffraction, 3 ligands (NAG, BMA, FUC). MolNFT v1 #125575 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5LCV
- Type
- protein
- Length
- 1,249 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A120IIH9
- Ligands
- NAG, BMA, FUC
Structure
x-ray diffraction · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 406 | — | A0A120IIH9 |
| B | — | protein | 405 | — | A0A120IIH9 |
| H | — | protein | 226 | — | — |
| L | — | protein | 212 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 3 copies · chains B, H, A
- BMA · beta-D-mannopyranose · sugar
- FUC · alpha-L-fucopyranose · sugar · chains B
- GOL · Glycerol · additive · 3 copies · chains A, B
- FMT · Formic acid · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5LCV · Structural basis of Zika and Dengue virus potent antibody cross-neutralization · the same entry in another collection · chain H against H, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A120IIH9
- Elsewhere: RCSB PDB 5LCV · PDBe 5LCV · UniProt A0A120IIH9
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