MolNFT v1 · #125558 · protein
Oceanobacillus iheyensis macrodomain mutant D40A
5LCC · Macrod-type macrodomain: “Oceanobacillus iheyensis macrodomain mutant D40A”. X-ray diffraction, 4 pockets (best druggability 0.65). MolNFT v1 #125558 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5LCC
- Type
- protein
- Length
- 377 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Macrod-type macrodomain
- UniProt
- Q8EP31
- Pockets
- 4 · best druggability 0.65
Structure
x-ray diffraction · 2 distinct chains · 42% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Macrod-type macrodomain | protein | 189 | 40% helix, 20% strand | Q8EP31 |
| B | Macrod-type macrodomain | protein | 188 | 44% helix, 22% strand | Q8EP31 |
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 353 | 0.65 | 0.80 | 42 | empty |
| 2 | 149 | 0.63 | 0.86 | 35 | empty |
| 3 | 248 | 0.55 | 0.77 | 29 | empty |
| 4 | 128 | 0.41 | 0.75 | 28 | empty |
Interfaces
1 interface between chains.
- A–B · 725 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 5LCC · Oceanobacillus iheyensis macrodomain mutant D40A · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8EP31
- Elsewhere: RCSB PDB 5LCC · PDBe 5LCC · UniProt Q8EP31
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