MolNFT v1 · #125535 · protein
Oceanobacillus iheyensis macrodomain mutant N30A
5LBP · Macrod-type macrodomain: “Oceanobacillus iheyensis macrodomain mutant N30A”. X-ray diffraction, 1 ligand (PO4), 1 pocket (best druggability 0.42). MolNFT v1 #125535 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5LBP
- Type
- protein
- Length
- 196 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Macrod-type macrodomain
- UniProt
- Q8EP31
- Ligands
- PO4
- Pockets
- 1 · best druggability 0.42
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Macrod-type macrodomain | protein | 196 | 40% helix, 20% strand | Q8EP31 |
Ligands and binding sites
- PO4 · Phosphate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 149 | 0.42 | 0.75 | 33 | PO4 |
Compared structures
- 5LBP · Oceanobacillus iheyensis macrodomain mutant N30A · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8EP31
- Elsewhere: RCSB PDB 5LBP · PDBe 5LBP · UniProt Q8EP31
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