MolNFT v1 · #125531 · protein
Crystal structure of the N-domain of HMA8, a copper-transporting P- type ATPase
5LBK · Copper-transporting ATPase PAA2, chloroplastic: “Crystal structure of the N-domain of HMA8, a copper-transporting P- type ATPase”. X-ray diffraction, 3 pockets (best druggability 0.59). MolNFT v1 #125531 on GenesisL1: 3D structure…
- PDB
- 5LBK
- Type
- protein
- Length
- 237 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Copper-transporting ATPase PAA2, chloroplastic
- EC
- 3.6.3.4
- UniProt
- B9DFX7
- Pockets
- 3 · best druggability 0.59
Structure
x-ray diffraction · 2 distinct chains · 35% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Copper-transporting ATPase PAA2, chloroplastic (EC 3.6.3.4) | protein | 119 | 35% helix, 31% strand | B9DFX7 |
| B | Copper-transporting ATPase PAA2, chloroplastic (EC 3.6.3.4) | protein | 118 | 34% helix, 31% strand | B9DFX7 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 196 | 0.59 | 0.81 | 26 | empty |
| 2 | 77 | 0.45 | 0.81 | 21 | empty |
| 3 | 125 | 0.41 | 0.76 | 23 | empty |
Interfaces
1 interface between chains.
- A–B · 777 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 5LBK · Crystal structure of the N-domain of HMA8, a copper-transporting P-type ATPase · the same entry in another collection · chain A against A, TM-score 1.00
- B9DFX7 · AlphaFold monomer V2.0 prediction for copper-transporting ATPase PAA2, chloroplastic… · a predicted model of the same protein · chain B against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B9DFX7
- Elsewhere: RCSB PDB 5LBK · PDBe 5LBK · UniProt B9DFX7
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