MolNFT v1 · #125489 · protein
Crystal structure of apo hydf from thermotoga maritima
5LAD · Putative GTP-binding protein: “Crystal structure of apo hydf from thermotoga maritima”. X-ray diffraction, 8 pockets (best druggability 0.66). MolNFT v1 #125489 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5LAD
- Type
- protein
- Length
- 359 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative GTP-binding protein
- UniProt
- Q9WYS6
- Pockets
- 8 · best druggability 0.66
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative GTP-binding protein | protein | 359 | 38% helix, 17% strand | Q9WYS6 |
Pockets
8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 121 | 0.66 | 0.88 | 20 | empty |
| 2 | 107 | 0.54 | 0.83 | 26 | empty |
| 3 | 135 | 0.51 | 0.80 | 22 | empty |
| 4 | 58 | 0.44 | 0.83 | 15 | empty |
| 5 | 54 | 0.35 | 0.78 | 17 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 5LAD · Crystal Structure of apo HydF from thermotoga maritima · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9WYS6
- Elsewhere: RCSB PDB 5LAD · PDBe 5LAD · UniProt Q9WYS6
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