MolNFT v1 · #125461 · protein
Oceanobacillus iheyensis macrodomain with adpr
5L9K: “Oceanobacillus iheyensis macrodomain with adpr”. X-ray diffraction, 1 ligand (AR6). MolNFT v1 #125461 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5L9K
- Type
- protein
- Length
- 379 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- Q8EP31
- Ligands
- AR6
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 190 | — | Q8EP31 |
| B | — | protein | 189 | — | Q8EP31 |
Ligands and binding sites
- AR6 · [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl [hydroxy-[[(2R,3S,4R,5S)-3,4,5-trihydroxyoxolan-2-yl]methoxy]phosphoryl] hydrogen phosphate · ligand · 2 copies · chains A, B
- GOL · Glycerol · additive · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5L9K · Oceanobacillus iheyensis macrodomain with adpr · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8EP31
- Elsewhere: RCSB PDB 5L9K · PDBe 5L9K · UniProt Q8EP31
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