MolNFT v1 · #125374 · protein
Plexin A2 extracellular segment domains 4-5 (PSI2-IPT2), resolution 1.36 ångström
5L74 · Plexin-A2: “Plexin A2 extracellular segment domains 4-5 (PSI2-IPT2), resolution 1.36 ångström”. X-ray diffraction, 3 ligands (NAG, NA, CL). MolNFT v1 #125374 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5L74
- Type
- protein
- Length
- 151 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Plexin-A2
- UniProt
- P70207
- Ligands
- NAG, NA, CL
Structure
x-ray diffraction · 1 distinct chain · 11% helix, 42% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Plexin-A2 | protein | 151 | 11% helix, 42% strand | P70207 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 3 copies · chains A
- NA · Sodium ion · metal · 2 copies · chains A
- CL · Chloride ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 5 disulfide, 3 glycan (disulfide, N-glycosylation).
Compared structures
- 5L74 · Plexin A2 extracellular segment domains 4-5 (PSI2-IPT2), resolution 1.36 Angstrom · the same entry in another collection · chain A against A, TM-score 1.00
- P70207 · AlphaFold monomer V2.0 prediction for plexin-A2 (P70207) · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P70207
- Elsewhere: RCSB PDB 5L74 · PDBe 5L74 · UniProt P70207
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